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Scientific Information Database (SID) - Trusted Source for Research and Academic Resources
Scientific Information Database (SID) - Trusted Source for Research and Academic Resources
Scientific Information Database (SID) - Trusted Source for Research and Academic Resources
Scientific Information Database (SID) - Trusted Source for Research and Academic Resources
Scientific Information Database (SID) - Trusted Source for Research and Academic Resources
Scientific Information Database (SID) - Trusted Source for Research and Academic Resources
Scientific Information Database (SID) - Trusted Source for Research and Academic Resources
Scientific Information Database (SID) - Trusted Source for Research and Academic Resources
Title: 
Author(s): 

Issue Info: 
  • Year: 

    0
  • Volume: 

    5
  • Issue: 

    1 و 2 (پیاپی 12)
  • Pages: 

    -
Measures: 
  • Citations: 

    0
  • Views: 

    1390
  • Downloads: 

    0
Keywords: 
Abstract: 

Yearly Impact: مرکز اطلاعات علمی Scientific Information Database (SID) - Trusted Source for Research and Academic Resources

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Issue Info: 
  • Year: 

    2012
  • Volume: 

    5
  • Issue: 

    1-2 (12)
  • Pages: 

    7-22
Measures: 
  • Citations: 

    0
  • Views: 

    1416
  • Downloads: 

    0
Abstract: 

Loop-mediated isothermal amplification (LAMP) is nucleic acid amplification method that amplifies target isothermally at 62-65oC. In this approach, withouth thermal denaturation step, double stranded DNA is simultaneousely denatured and synthesized by using the Bst (Bacillus stearothrmophilus) DNA polymerase with high strand displacement activity. Thus the reaction can be conducted with a cost-effective quipment such as water bath or heating block, and the thermal-cycling needs of a PCR are avoided. The LAMP reaction uses six primers that specifically recognize eight distinct regions on the target sequence. Moreover, the LAMP reaction produces a large amount of amplified products, resulting in easier detection, such as visual judgment based on the turbidity or colour change result from fluorescent dsDNA intercalating dye in the reaction mixture, so gel electrophoresis is not required. Therefore, the LAMP assay has the advantages of high specificity, sensitivity, amplification efficiency and simple detection, that without the need for expensive equipment could be applicable as valuable tool for rapid diagnosis of infectious diseases in both clinical and hospital laboratories of developing countries. The aim of this article is to introduce the principles and applications of LAMP method for detection of infectious agents.

Yearly Impact: مرکز اطلاعات علمی Scientific Information Database (SID) - Trusted Source for Research and Academic Resources

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Issue Info: 
  • Year: 

    2012
  • Volume: 

    5
  • Issue: 

    1-2 (12)
  • Pages: 

    23-29
Measures: 
  • Citations: 

    0
  • Views: 

    730
  • Downloads: 

    0
Abstract: 

Background and Objectives: Rhodobacter is a gram negative rod shaped purple phototrophic bacteria capable of oxidizing H2S to S and thus capable of elimination of H2S from nature. This project aimed to isolate and identify Rhodobacter sphaeroides from nature.Material and Methods: The water samples were collected from anaerobic lagoon wastewater of Mahdi-shahr wastewater treatment plant. The samples then were cultured on Pfennig'S Medium I. After growing the bacteria, the colonies were investigated based on 16S rRNA gene amplification. Finally, the PCR products were sequenced and were investigated by BLAST to determine the phylogenetic of the isolated bacteria.Results: Macroscopic studies on the isolated red colonies showed gram negative bacilli. Based on the 16S rRNA sequence studies, this bacterium belonged Rhodobacter and had 99% similarity to Rhodobacter sphaeroides.Conclusion: Fist time in Iran, Rhodobacter sphaeroides was isolated. Also, this study could isolate a new strain of Rhodobacter sphaeroides was isolated from waste water and was registered in gene bank with IRSMM1 name and JX262384 acceptation number.

Yearly Impact: مرکز اطلاعات علمی Scientific Information Database (SID) - Trusted Source for Research and Academic Resources

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Issue Info: 
  • Year: 

    2012
  • Volume: 

    5
  • Issue: 

    1-2 (12)
  • Pages: 

    30-38
Measures: 
  • Citations: 

    0
  • Views: 

    1362
  • Downloads: 

    0
Abstract: 

Background and Objectives: Production of Sialidase by oral microbial flora leads to degradation of glycoproteins and gangliosides on the surfaces of the cells, leading to cell physiologic changes and increase oral diseases. This enzyme can be isolated from various microorganisms including bacteria, protozoa and etc. This study was aimed to isolate sialidase producing bacteria from normal flora of mouth.Material and Methods: This cross-sectional descriptive study conducted on 94 mouth swab samples of individuals who visited by dentists in the Shahryar dental clinic. Isolation and identification of bacteria was performed by specific assays and culture media. Sialidase producing bacteria were identified by sensitive fluorometric assay and using 2ʹ-(4-methylumbelliferyl) a-D-N acetylneuraminic acid as substrate. Activity and stability of enzyme was studied in different condition of pH and temperature.Results: In this study, isolated bacteria belonged to Streptococcus, Bacterioedes, Fusobacterium, Capnocytophaga and Actinobacilus. Isolated Streptococcus strains were showed 98% homology with S. pneumonia, S. mutans, S. sanguis, S. salivarius and S. oralis species. The higher enzyme activity was observed in Streptococcus and Bacterioedes in optimum pH 6 and 35oC. Also, enzyme production was accomplished parallel with growth of bacteria.Conclusion: Mouth normal flora of healthy individuals contain several sialidase producing bacteria which could use as cheap and available source of this enzyme for medical and industrial application.

Yearly Impact: مرکز اطلاعات علمی Scientific Information Database (SID) - Trusted Source for Research and Academic Resources

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Issue Info: 
  • Year: 

    2012
  • Volume: 

    5
  • Issue: 

    1-2 (12)
  • Pages: 

    39-46
Measures: 
  • Citations: 

    0
  • Views: 

    1481
  • Downloads: 

    0
Abstract: 

Background and Objectives: L-asparaginase can be effectively used for the treatment of acute lymphoblastic leukemia and tumor cells as well as in food industries. The L-asparaginase is the first enzyme with antitumor activity that is intensively studied in different human cancers. Purpose of this study was isolation and identification of Iranian native L-asparaginase producing bacteria and determination of their enzyme activities. Material and Methods: The soil and water samples were collected from various cities of Iran. For screening of asparaginase producing bacteria, species were cultivated on M9 agar media containing phenol red as pH indicator. Enzyme production and assay were performed by submerged fermentation and Nesslerization method respectively. Results: 11out of 61 isolated species could produce the enzyme and one of them showed maximum enzyme productivity. This thermophilic species was belonged to Bacillus genus based on biochemical test results. This species could produce 1613.178 (U/ml) enzymes after 48 hours incubation in 45oC. Conclusion: Because of application of L-asparaginase in various fields, the enzyme produced by this species can be suitable for utilization after more investigations.

Yearly Impact: مرکز اطلاعات علمی Scientific Information Database (SID) - Trusted Source for Research and Academic Resources

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Issue Info: 
  • Year: 

    2012
  • Volume: 

    5
  • Issue: 

    1-2 (12)
  • Pages: 

    47-57
Measures: 
  • Citations: 

    0
  • Views: 

    9923
  • Downloads: 

    0
Abstract: 

Background and Objectives: Since milk and its products play important role in human diet and society health, it is important to pay attention to its health. The aim of this research is the study of microbial contamination of milk and dairy products produced by the industrial plants in Qom province. Material and Methods: In this cross-sectional descriptive study, a total of 903 different samples of milk and dairy products were collected from 10 dairy plants in Qom province. All samples were studied for detection of microbial contamination by using culture and biochemical tests. Results: Overall, 809 (89.6%) of the samples were acceptable and 94 (10/4%) were unacceptable in terms of microbial contamination. The most isolated bacteria from the contaminated products were Enterobacteriaceae (6.3%), Escherichia coli (6.1%), mold and yeast (4.8%), coliform (4.7%), aerobic mesophilic bacteria (4.2%) and Staphylococcus aureus coagulase positive (1.1%).Conclusion: The results of this study indicated that most of the dairy products produced of the food industries in Qom province had acceptable quality. However, with a view to microbial contamination of some plants products and also their unacceptable quality, hygiene and control actions must carry out in order to eliminate the contaminations of milk and its products.

Yearly Impact: مرکز اطلاعات علمی Scientific Information Database (SID) - Trusted Source for Research and Academic Resources

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Issue Info: 
  • Year: 

    2012
  • Volume: 

    5
  • Issue: 

    1-2 (12)
  • Pages: 

    58-65
Measures: 
  • Citations: 

    0
  • Views: 

    867
  • Downloads: 

    0
Abstract: 

Background and Objectives: Enterococcus is part of human and animal intestinal flora. The withdrawal of these bacteria from their original location causes infections such as bacteremia, endocarditis, and Urinary Tract Infection (UTI) in hospitalized patients. The aim of this study is to determine the prevalence of vancomycin-resistant Enterococci (VRE) strains and the phenotypes of the Van genes in Enterococcus isolated from rectal swabs of patients hospitalized in the Intensive Care Unit (ICU).Material and Methods: In this cross-sectional study, 156 rectal-swab samples were collected from patients in three wards of ICUs in the Shahid Beheshti Hospital. Enterococcus was detected in samples with the Gram stain and biochemical tests. An antibiotic resistance test was done using CLSI criteria. Different types of vancomycin resistance genes were identified by the multiplex PCR technique. Results: Enterococcus was detected in 135 rectal-swab samples (86.5%). The prevalence of VRE strains was 42.9% (58 cases). The frequency of VanA and VanC genes were 69% and 6.9%, respectively. In this study neither of van B, D, E and G genes were observed. 59.2% of patients who consumed 3 to 4 types of antibiotics, and 35.4% of those who consumed 1 to 2 types of antibiotics, had VRE.Conclusion: Our findings highlight that antibiotic consumption can lead to increasing the resistance phenotypes. The prevalence of VRE was indicated 3.6 times more in patients who had consumed antibiotics. Also, with increasing number of antibiotic consumption of 1-2 to 3-4 types, risk of antibiotic-resistant Enterococci increases 2.65 times.

Yearly Impact: مرکز اطلاعات علمی Scientific Information Database (SID) - Trusted Source for Research and Academic Resources

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