The present study aimed to compare the genetic diversity in offsprings derivedfrom wild, farmed, and mixed roach (R. caspicus) using five microsatellite loci(CA1, CA7, CypG27, Lid1, Rru4). A total of 90 fish (30 specimens from each population) were collected and then fixed in ethanol 96% for DNA extraction to investigate the genetic diversity. The number of alleles at offsprings derived fromdifferent broodstocks (wild, farmed, and mixed) was 10. 4, 10. 4, and 9 alleles, respectively, and indeed 29 alleles were observed in all three populations. Thenumber of effective alleles at wild, farmed, and mixed offsprings was 6. 78, 7. 58, and 6. 80, respectively. The allele frequency among wild, farmed, and mixed populations was 7, 8, and 8, respectively. The allele frequency declined inoffspring from wild broodstock due to the inbreeding and genetic drift. The mean heterozygosis (HO) was 0. 85, 0. 77, and 0. 85 in offsprings from wild, farmed, and mixed broodstocks, respectively. Also, effective heterozygosis (He) was 0. 828, 0. 859, and 0. 849 in offsprings from wild, farmed, and mixed broodstocks, respectively. Approximately, all of the loci showed deviation from HardyWeinberg equilibrium. The genetic distance among wild, farmed, and mixedoffspring populations was 0. 459, 0. 298, and 0. 684, respectively. The results of theanalysis of molecular variance revealed that the genetic diversity within the individual was 90%, while it was only 3% among them. FST value was 0. 032 thatindicated the low genetic differentiation among three populations, which might bebecause of the low number of alleles in three populations. Furthermore, NaturalMigration (Nm) between two stations was recorded at 7. 394. UPGMA clusteranalysis based on genetic distance showed that the breeding and hybrid populations were in a separate branch of the wild population branch.