ESTIMATION OF EFFECTIVE POPULATION SIZE IN SARABI CATTLE BASED ON SINGLE NUCLEOTIDE POLYMORPHISM MARKERS

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KARIMI KARIM; ESMAEELIZADEH ALI K.; ASADI FOZI MASOUD

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Journal: Iranian Journal of Animal Science Year:2015 | Volume:46 | Issue:3 Page(s): 335-343

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Title

ESTIMATION OF EFFECTIVE POPULATION SIZE IN SARABI CATTLE BASED ON SINGLE NUCLEOTIDE POLYMORPHISM MARKERS

Author(s)

KARIMI KARIM | ESMAEELIZADEH ALI K. | ASADI FOZI MASOUD | Issue Writer Certificate

Keywords

EFFECTIVE POPULATION SIZE

GENETIC CONSERVATION

MINOR ALLELE FREQUENCY

OBSERVED HETEROZYGOSITY

Abstract

The objective of this study was to estimate the effective number of breeders in Sarabi cattle population using heterozygote-excess method based on single nucleotide polymorphism markers. Data consisted of 20 Sarabi cows. SNP genotyping was performed using Illumina High-density Bovine BeadChip designed to genotype 777, 962 SNPs. Average OBSERVED HETEROZYGOSITY, expected heterozygosity, minor allele frequencies and percentage of deviation from Hardy-Weinberg test were estimated. Effective number of breeders was estimated per each chromosome using NEESTIMATOR (v2) software based on heterozygote-excess method. Average chromosome-wise effective number of breeders was equal to 28 and corresponding average confidence interval was between 17.3 and 40.2. Results of this study indicated that Sarabi breed is on serious risk of extinction. Design of appropriate programs is necessary to conserve remaining purebred cattles.

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APA: Copy

KARIMI, KARIM, ESMAEELIZADEH, ALI K., & ASADI FOZI, MASOUD. (2015). ESTIMATION OF EFFECTIVE POPULATION SIZE IN SARABI CATTLE BASED ON SINGLE NUCLEOTIDE POLYMORPHISM MARKERS. IRANIAN JOURNAL OF ANIMAL SCIENCE (IRANIAN JOURNAL OF AGRICULTURAL SCIENCES), 46(3), 335-343. SID. https://sid.ir/paper/193672/en

Vancouver: Copy

KARIMI KARIM, ESMAEELIZADEH ALI K., ASADI FOZI MASOUD. ESTIMATION OF EFFECTIVE POPULATION SIZE IN SARABI CATTLE BASED ON SINGLE NUCLEOTIDE POLYMORPHISM MARKERS. IRANIAN JOURNAL OF ANIMAL SCIENCE (IRANIAN JOURNAL OF AGRICULTURAL SCIENCES)[Internet]. 2015;46(3):335-343. Available from: https://sid.ir/paper/193672/en

IEEE: Copy

KARIM KARIMI, ALI K. ESMAEELIZADEH, and MASOUD ASADI FOZI, “ESTIMATION OF EFFECTIVE POPULATION SIZE IN SARABI CATTLE BASED ON SINGLE NUCLEOTIDE POLYMORPHISM MARKERS,” IRANIAN JOURNAL OF ANIMAL SCIENCE (IRANIAN JOURNAL OF AGRICULTURAL SCIENCES), vol. 46, no. 3, pp. 335–343, 2015, [Online]. Available: https://sid.ir/paper/193672/en

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