Objective(s): The protective effect of ethyl acetate fraction (EAF) of Boerhavia diffusa roots against Tacrolimus (TAC) induced nephrotoxicity was studied using MDCK Cell lines. Materials and Methods: Ethanolic root extract of B. diffusa was fractionated using the liquid-liquid partition method. The cytotoxic effect of TAC and protective effect of EAF co-treatment were studied in MDCK Cell lines by measuring ROS, LPO, and NO levels; collagen accumulation, effect on mitochondrial membrane integrity and Cell cycle analysis were studied. The active component in EAF was quantified by HPLC analysis. Results: TAC induced toxicity, leading to apoptosis and necrosis, was significantly reduced (P<0. 001) in EAF co-treatment, with reversal of Cell cycle arrest and reduced Cell population at sub G0/G1 phase. Further, ROS (P<0. 05), LPO and NO (P<0. 001), were significantly reduced with EAF co-treatment compared with TAC individually treated Cells. TAC induced mitochondrial membrane integrity loss was found to be significantly reduced in co-treated Cells, as measured by rhodamine123 (P<0. 05) and translocation of cytochrome c (P<0. 001) from nucleus to cytoplasm, and caspase 3 release (P<0. 001). The same was confirmed through annexin-FITC and PI staining (P<0. 05) with reduced apoptotic and necrotic death in co-treated population. Interestingly, EAF co-treatment decreased collagen accumulation (P<0. 001) with significant increase in the Cell survival of tubular epithelial Cells. HPLC analysis showed the presence of Quercetin (87. 5 mg/g) in EAF, which may be responsible for the nephroprotective role. Conclusion: Thus, these results provide sound evidence that EAF may be an effective adjuvant therapy to prevent nephrotoxicity induced by TAC.