Objective: Regarding to limitations of in vivo study in human nervous system development, it is necessary to design an in vitro model to evaluate the in vivo effect of surrounding tissues on neurogenesis and regional identity of human neural plate. On the other hand the neural patterning role/roles of somites and notochords in regional compartments of neural tube along rostro-caudal and dorso-ventral axes, especially in humans, remain elusive.Materials and Methods: Rostral neural progenitors (NPs) were initially generated from adherent human embryonic stem cells (hESCs) in a defined condition and characterized. Then, to find the role of somites (S) and notochords (N) in rostro-caudal (RC) and dorso-ventral (DV) patterning of neuronal cells, NPs were co-cultured with microencapsulated chicken somites or notochords in alginate beads.Results: It was revealed that notochord induced spinal cord ventral brachiothoracic identity with expression of IRX3, PAX6, NKX6.1, NKX2.2, EVX1, EN1, CHX10, and HOXC8 and motoneuron makers, HB9, ISL1, ISL2, LHX1, and LHX3 in addition to its proliferation effect on NPs. We observed a synergic effect on motoneuron induction particularly lateral motor column subtype when S and N were used together. Moreover, S induced hindbrain identity with expression of HOXB4 in differentiated neuronal cells from NPs.Conclusion: Our results indicated that highly enriched NPs can be generated in an adherent and defined system from hESCs. Moreover, S and N tissues were highly influenced neuronal differentiation in point of proliferation, neurogenesis, RC and DV patterning. These results indicate a very simple and efficient protocol to mimic in vivo events for human neural development in vitro which is important in the context of cellular replacement therapies.