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Information Journal Paper

Title

IDENTIFICATION OF NEW ARGONAUTE GENE IN FOREST STRAWBERRY (FRAGARIA VESCA)

Pages

  199-206

Abstract

 Among proteins involved in gene silencing and creation of small RNA, ARGONAUTE PROTEINS play an important role that has been shown to possess endonucleolytic activity. In the present study, we aim to use BIOINFORMATICs tools for analyzing putative argonaute genes in FOREST STRAWBERRY. A BLAST analysis was performed against the available strawberry genomic sequence draft to identify argonaute sequences using previously reported argonaute sequences of Arabidopsis. Sequence alignment, 3D structure, phylogenetic tree and conserved domains were generated for strawberry argonautes. Results showed that 13 putative argonaute genes are spread on different chromosomes of FOREST STRAWBERRY. There were three classes of ARGONAUTE PROTEINS similar to that of Arabidopsis, and each varies in length from 845 to 1956 AA, with an average of 1076 AA and 120 kDa. FOREST STRAWBERRY ARGONAUTE PROTEINS have PAZ, PIWI and MID conserved domains. argonaute 6 contained a new domain GT1-Sucrose-synthase which has not been reported for plants and animals previously. Our results showed that FOREST STRAWBERRY have three classes of argonautes and a new argonaute that needs more studies.

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    APA: Copy

    SHAMSI FARD, M.H., MIRZAEI, K., & BAHRAMNEJAD, B.. (2014). IDENTIFICATION OF NEW ARGONAUTE GENE IN FOREST STRAWBERRY (FRAGARIA VESCA). MODERN GENETICS JOURNAL (MGJ), 9(2), 199-206. SID. https://sid.ir/paper/116613/en

    Vancouver: Copy

    SHAMSI FARD M.H., MIRZAEI K., BAHRAMNEJAD B.. IDENTIFICATION OF NEW ARGONAUTE GENE IN FOREST STRAWBERRY (FRAGARIA VESCA). MODERN GENETICS JOURNAL (MGJ)[Internet]. 2014;9(2):199-206. Available from: https://sid.ir/paper/116613/en

    IEEE: Copy

    M.H. SHAMSI FARD, K. MIRZAEI, and B. BAHRAMNEJAD, “IDENTIFICATION OF NEW ARGONAUTE GENE IN FOREST STRAWBERRY (FRAGARIA VESCA),” MODERN GENETICS JOURNAL (MGJ), vol. 9, no. 2, pp. 199–206, 2014, [Online]. Available: https://sid.ir/paper/116613/en

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