Genetic diversity and identification of informative microsatellite alleles in rice seedlings under normal conditions and salinity stress

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Ghasemi Marzbani Bahareh; SABOURI HOSSEIN; Hosseini Moghadam Hossein; BIABANI ABBAS; SHEIKHZADEH MOHAMMAD JAVAD

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Journal: Crop Biotechnology Year:2019 | Volume:8 | Issue:26 Page(s): 37-49

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Title

Genetic diversity and identification of informative microsatellite alleles in rice seedlings under normal conditions and salinity stress

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Keywords

RiceQ2

Association AnalysisQ2

MarkersQ2

SalinityQ2

Abstract

Genetic diversity is of great importance for breeding programs. In order to study the genetic diversity of 102 different Rice genotypes based on seedling traits and molecular experiments, an experiment was conducted in a Completely Randomized Design with three replications. The studied traits including Plumule length, radicle length, length of the largest leaf, width of the largest leaf, number of root, fresh shoot weight, fresh weight of root and root volume, and dry weight of shoot, dry weight of root were measured. The average of the Polymorphic of information content (PIC) was estimated to be 0. 2716, indicating RM1029 with the of least 0. 175 and the RM216 with the highest of 0. 435 (PIC). The results of Association Analysis between microsatellite marker and seeding traits at normal condition indicated that the RM60B allele for root length, RM127A allele for root, RM231G allele for the fresh weight of the stem explained high percentage of variations. In saline condition, RM129H allele for stem length trait, RM12091 B allele for root attribute, RM263G allele for stem fresh weight, RM127C allele for width of largest leaf explained high percentage of phenotypic variations and were identified as important Markers. The results of this experiment can be used in breeding programs.

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APA: Copy

Ghasemi Marzbani, Bahareh, SABOURI, HOSSEIN, Hosseini Moghadam, Hossein, BIABANI, ABBAS, & SHEIKHZADEH, MOHAMMAD JAVAD. (2019). Genetic diversity and identification of informative microsatellite alleles in rice seedlings under normal conditions and salinity stress. JOURNAL OF CROP BIOTECHNOLOGY, 8(26 ), 37-49. SID. https://sid.ir/paper/357797/en

Vancouver: Copy

Ghasemi Marzbani Bahareh, SABOURI HOSSEIN, Hosseini Moghadam Hossein, BIABANI ABBAS, SHEIKHZADEH MOHAMMAD JAVAD. Genetic diversity and identification of informative microsatellite alleles in rice seedlings under normal conditions and salinity stress. JOURNAL OF CROP BIOTECHNOLOGY[Internet]. 2019;8(26 ):37-49. Available from: https://sid.ir/paper/357797/en

IEEE: Copy

Bahareh Ghasemi Marzbani, HOSSEIN SABOURI, Hossein Hosseini Moghadam, ABBAS BIABANI, and MOHAMMAD JAVAD SHEIKHZADEH, “Genetic diversity and identification of informative microsatellite alleles in rice seedlings under normal conditions and salinity stress,” JOURNAL OF CROP BIOTECHNOLOGY, vol. 8, no. 26 , pp. 37–49, 2019, [Online]. Available: https://sid.ir/paper/357797/en

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