Meta-analysis of Transcriptomics related to the genes of the mevalonate (MVA) and the 2-C-methyl-D-erythritol 4-phosphate (MEP) pathways for isoprenoids biosynthesis in plants

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Aminfar Zahra; RABIEI BABAK; TOHIDFAR MASOUD; MIRJALILI MOHAMMAD HOSSEIN

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Journal: Crop Biotechnology Year:2019 | Volume:8 | Issue:25 Page(s): 1-17

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Information Journal Paper

Title

Meta-analysis of Transcriptomics related to the genes of the mevalonate (MVA) and the 2-C-methyl-D-erythritol 4-phosphate (MEP) pathways for isoprenoids biosynthesis in plants

Author(s)

Aminfar Zahra | RABIEI BABAK | TOHIDFAR MASOUD | MIRJALILI MOHAMMAD HOSSEIN | Issue Writer Certificate

Keywords

GenevestigatorQ1

IsoprenoidsQ1

Meta-analysisQ1

MicroarrayQ1

TranscriptomeQ1

Abstract

Isoprenoids and their derivatives represent the largest group of natural compounds in plants that are biosynthesized from isoprenyl diphosphate C5 units. These C5 units generated by two distinctive biosynthetic pathways in plants including mevalonate (MVA) pathway in the cytoplasm and methylerthritol phosphate (MEP) pathway in plastids. To perform a Meta-analysis of two pathways of MVA and MEP, expression data of the Microarray experiments in different tissues, developmental stages, biotic and abiotic stresses were used in Arabidopsis thaliana as a model plant. The transcriptom Meta-analysis was carried out using Genevestigator as a large database containing transcriptomics data of GEO in NCBI and ArrayExpress in EBI. The results of the Meta-analysis showed that the transcription of genes encoding the enzymes of MVA and MEP pathway did not coordinate and they had different expression patterns in developmental stages, various tissues and conditions. MVA pathway genes show the highest expression in the roots and reproductive organs, while the MEP pathway genes are expressed in photosynthetic tissues. The results obtained here can help to understand how the underlying pathway gene networks are organized and regulated in different conditions, tissues and developmental stages.

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APA: Copy

Aminfar, Zahra, RABIEI, BABAK, TOHIDFAR, MASOUD, & MIRJALILI, MOHAMMAD HOSSEIN. (2019). Meta-analysis of Transcriptomics related to the genes of the mevalonate (MVA) and the 2-C-methyl-D-erythritol 4-phosphate (MEP) pathways for isoprenoids biosynthesis in plants. JOURNAL OF CROP BIOTECHNOLOGY, 8(25 ), 1-17. SID. https://sid.ir/paper/400121/en

Vancouver: Copy

Aminfar Zahra, RABIEI BABAK, TOHIDFAR MASOUD, MIRJALILI MOHAMMAD HOSSEIN. Meta-analysis of Transcriptomics related to the genes of the mevalonate (MVA) and the 2-C-methyl-D-erythritol 4-phosphate (MEP) pathways for isoprenoids biosynthesis in plants. JOURNAL OF CROP BIOTECHNOLOGY[Internet]. 2019;8(25 ):1-17. Available from: https://sid.ir/paper/400121/en

IEEE: Copy

Zahra Aminfar, BABAK RABIEI, MASOUD TOHIDFAR, and MOHAMMAD HOSSEIN MIRJALILI, “Meta-analysis of Transcriptomics related to the genes of the mevalonate (MVA) and the 2-C-methyl-D-erythritol 4-phosphate (MEP) pathways for isoprenoids biosynthesis in plants,” JOURNAL OF CROP BIOTECHNOLOGY, vol. 8, no. 25 , pp. 1–17, 2019, [Online]. Available: https://sid.ir/paper/400121/en

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