EXPLORING POSSIBLE VARIATION AMONG IRANIAN ERWINIA AMYLOVORA STRAINS USING MULTILOCUS TYPING AND TANDEM REPEAT ANALYSIS

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REFAHI M.; BAGHAEE RAVARI S.; MAHDIKHANI MOGHADAM E.

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Journal: JOURNAL OF AGRICULTURAL SCIENCE AND TECHNOLOGY (JAST) Year:2017 | Volume:19 | Issue:3 Page(s): 745-754

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Title

EXPLORING POSSIBLE VARIATION AMONG IRANIAN ERWINIA AMYLOVORA STRAINS USING MULTILOCUS TYPING AND TANDEM REPEAT ANALYSIS

Author(s)

REFAHI M. | BAGHAEE RAVARI S. | MAHDIKHANI MOGHADAM E. | Issue Writer Certificate

Keywords

FIRE BLIGHTQ3

HOUSEKEEPING GENESQ3

IRANQ3

VNTRQ3

Abstract

In the current study, molecular typing of 50Erwinia amylovora strains related to different regions in IRAN was evaluated using multi-locus sequence analysis and variable number of tandem repeats. In the first assay, phylogenetic tree based on partial sequences of recombinase A, sigma factor S and a heat shock protein GroEL showed significant identity in studied gene sequences. A single nucleotide variation ingro EL was determined in IrGh59 strain related toC rataegus spp. from Ghazvin Province. In VNTR analysis, the same fingerprinting profile similar toE. amylovora reference strain ATCC49946 was yielded for tested strains except NBQ1 and MQ1 which may reflect a unique contaminating source for this disease in IRAN. In addition, the honey-bee movements with respect to blossom season probably have a considerable role in FIRE BLIGHT unique dispersal in our area. The NBQ1 and MQ1 strains generated different VNTR profiles, isolated from cultivars Neishabour and Esfehan ofCydonia oblonga plant, respectively. No definite assessment can be expressed in this case. However, possible entry of other infection mass from neighboring countries should be determined. Overall, VNTR profile analyses are recommended as a tool to evaluate genetic differences inE. amylovora populations. In addition, employing more strains from different known sourcescould be assistance to achieve more accurate results aboutE. amylovora genetic variation and also FIRE BLIGHT distribution patterns.

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APA: Copy

REFAHI, M., BAGHAEE RAVARI, S., & MAHDIKHANI MOGHADAM, E.. (2017). EXPLORING POSSIBLE VARIATION AMONG IRANIAN ERWINIA AMYLOVORA STRAINS USING MULTILOCUS TYPING AND TANDEM REPEAT ANALYSIS. JOURNAL OF AGRICULTURAL SCIENCE AND TECHNOLOGY (JAST), 19(3), 745-754. SID. https://sid.ir/paper/62431/en

Vancouver: Copy

REFAHI M., BAGHAEE RAVARI S., MAHDIKHANI MOGHADAM E.. EXPLORING POSSIBLE VARIATION AMONG IRANIAN ERWINIA AMYLOVORA STRAINS USING MULTILOCUS TYPING AND TANDEM REPEAT ANALYSIS. JOURNAL OF AGRICULTURAL SCIENCE AND TECHNOLOGY (JAST)[Internet]. 2017;19(3):745-754. Available from: https://sid.ir/paper/62431/en

IEEE: Copy

M. REFAHI, S. BAGHAEE RAVARI, and E. MAHDIKHANI MOGHADAM, “EXPLORING POSSIBLE VARIATION AMONG IRANIAN ERWINIA AMYLOVORA STRAINS USING MULTILOCUS TYPING AND TANDEM REPEAT ANALYSIS,” JOURNAL OF AGRICULTURAL SCIENCE AND TECHNOLOGY (JAST), vol. 19, no. 3, pp. 745–754, 2017, [Online]. Available: https://sid.ir/paper/62431/en

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