In order to evaluate the response of selected cultivars of almond, grafted on different rootstocks under drought stress due to increased irrigation intervals in the 2015-2016 year, in the Temperate Fruit Research Center, Horticultural Research Institute in Karaj, a factorial based on a randomized complete design with three replications was carried out. Factors comprised cultivars in five levels (Supernova, Texas, Marcona, Shokoufeh and K13-40), rootstocks in Three levels [peaches × almonds hybrids (GF-677 and GN-22), and bitter almond seedlings NO.32], and drought stress in four levels (irrigation intervals were 3 (Control), 5, 10 and 15 Days). The results showed that the interaction of three factors for chlorophyll fluorescence parameters include maximum (Fm), variable (Fv) and variable to maximum (Fv/Fm), electrolyte leakage and releate water content (RWC) of leaves at 1% probability level, and interaction effects of rootstock × cultivar for chlorophyll b and a/b as well as cultivar × drought stress for a/b were significant at 5% probability level. Also, interaction effects of rootstock × drought stress were significant for all evaluated traits except a/b at 1% probability level. Drought stress reduced Fv by increasing Fo and decreasing Fm, and reduced Fv/Fm in sensitive cultivars on seedling and GN-22 rootstocks from 0.82 to 0.67. As a general result, all of the cultivars on the GF-677 rootstock showed greater resistance to drought stress. Supernova and Shokofeh cultivars grafted on GF-677 rootstock were most resistant rootstock - scion compounds, but other rootstock-scions compounds, were sensitive to drought stress.