Cereal cyst nematodes are one of the most important cereal diseases in the world, which are detected in 38% of Khuzestan wheat and barley fields with harmful populations. In order to study and identify of fungi associated with cereal cyst nematode, Heterodera filipjevi, in Khuzestan province 39 of root and soil samples were taken from wheat fields infested with it during 2013-14. The extracted cysts were sterilized and cultured on PDA, CMA and WA media supplemented with antibiotics. The isolated fungi were purified and identified based on macroscopic and microscopic studies. The results showed that among of the 64 isolates were purified from cysts and eggs nematode, the most frequency common isolated fungi were Fusarium spp. (6 species) with 51. 56 percent and the lowest were Spadicoides atra, Macrophomina phaseolina and Lecanicillium lecanii each of 3. 12 percent. The frequency of other fungal genera including Alternaria, Paecillomyces, Penicillium, Chaetomium and Ulocladium were 15. 62, 7. 81, 6. 25, 4. 68 and 4. 68 percent respectively. S. atra is reported for the first time in the world and other fungal species listed were reported on H. filipjevi for the first time from Iran. The effect of 10 Fusarium isolates including F. dimerum, F. chlamydosporum, F. equiseti, F. nygamai, F. solani (3 isolates), F. beomiforme and F. oxysporum (2 isolates) on the cyst nematode in antibiotic WA indicated all of the Fusarium isolates parasite eggs and larvae inside eggs by 12-90 and 3-54 percent respectively.