Endo-perio lesions, resulting from the complex interaction of endodontic and periodontal infections, present significant clinical challenges due to their intertwined pathology, diagnostic difficulties, and limitations of conventional treatments. This review comprehensively explores the emerging role of polymeric nanocarriers as advanced drug delivery systems for the effective management of endo-perio lesions. Polymeric nanocarriers exhibit unique advantages, including enhanced drug stability, targeted and sustained release, improved bioavailability, and deep penetration into biofilms and periodontal pockets, which overcome the shortcomings of traditional therapies. The review discusses the pathophysiology of endo-perio lesions, the various types of polymeric nanocarriers such as nanoparticles, nanogels, micelles, dendrimers, and polymeric films, and their applications in delivering antimicrobial, anti-inflammatory, regenerative, and novel therapeutic agents. Recent advances in multifunctional polymeric nanocarriers combining antimicrobial, immunomodulatory, and regenerative approaches are highlighted, along with challenges related to biocompatibility, scalability, and regulatory frameworks. Future perspectives emphasize the integration of stimuli-responsive nanocarriers, precision medicine, and theranostic platforms for personalized periodontal therapy. This article underscores the transformative potential of polymeric nanocarriers to revolutionize endo-perio lesion management, advocating for further interdisciplinary research and clinical translation to realize their full therapeutic benefits.