One of the significant factors in seed germination is the altitude of seed source from the sea level which may significantly affect plant size or growth due to the differences in the environmental factors such as humidity, temperature, the intensity and quality of light, day length, and soil chemicals. This experiment was conducted to evaluate the effect of seed source (from the sea level) and salinity stress on Fortuynia bungei Boiss germination. An experiment was carried out in three replications, following a factorial, completely randomized design. The factors included: (1) seed source at two levels (Siyahkooh-Yazd, Ravar-Kerman) and (2) salinity stress at six levels (0, 25, 50, 75, 100, and 125 mM NaCl). The results indicated that germination percentage and rate, seed vigor, and stem length in both habitats were significantly reduced (p<0.01) with an increase in the amount of salinity. However, the amount of the reduction of these attributes varied depending on the seed source. In addition, the percentage and rate of germination were significantly different (p<0.01) in two habitats and the seeds obtained from Siyahkooh demonstrated a better performance.