In this research, the most important components of an obstacle-free airport design criteria such as; length and width of runway, safety area, stop way area, and dimensions of clear way, Including horizontal, conica, approach, and transitional surfaces are integrated into a mathematical model. Since high rise buildings and towers have always created problems for airport designers, in this research, a mathematical and computerized model has been developed to resolve these difficulties. The application of the developed model covers various categories of airports, including domestic and international. The methodology of research is such that all the obstacles surrounding the runway are controlled. In this way no point will be considered as an obstacle towards these surfaces. Should there be any obstacle, a solution will be recommended to resolve the problem. The standard code of practice used for this software complies with the documents of International civil Aviation organization 9ICAO). The developed software operates on Windows 98 and over platform based on Visual Basic 6.