Background and Aim: Gram-negative bacilli with multidrug resistance are important pathogens in hospitals and cause high mortality. The main purpose of this study was to determine the prevalence of Gram-negative bacilli with multidrug resistance isolated from clinical specimens of neonates and pediatrics referred to Besat hospital of Sanandaj city in 2018. Materials and Methods: In this cross-sectional descriptive study 10, 000 clinical specimens were studied, including,blood, urine, wounds, respiratory secretions and body fluids during 2018. Gram-negative bacteria were identified by standard microbiological methods, then susceptibility testing to common antibiotics was performed using disk diffusion method to determine strains with multidrug resistance. Results: In this study, from 10000 clinical specimens, 652 Gram-negative bacilli with positive cultures included urine 523 (80%), blood 78(12%), respiratory secretions 26(4%), wounds 15(2. 5%) and body fluids 10(1. 5%) were obtained from hospitalized and outpatients. Gram-negative bacilli isolated from these samples include Escherichia coli (65. 7%), Enterobacter spp (10. 4%), Citrobacter spp (8. 9%), Acinetobacter spp (7. 2%), Klebsiella spp (3. 5%), Pseudomonas spp (2. 6%), Proteus spp (0. 92%) and Serratia spp (0. 78%). Most of Gram-negative bacilli with multidrug resistance were isolated from NICU (neonate intensive care unit) and PICU (pediatric intensive care unit) wards. The highest and lowest antibiotic resistance was shown respectively, to ampicillin (84. 5%) and meropenem (9. 9%). The average multidrug resistance (MDR) was 68. 9%, ranging from 55. 9% in Enterobacter spp. to 83% in Acinetobacter spp. Conclusion: Multidrug resistance was high among the microorganisms of this center, so it is recommended to avoid unnecessary use of antibiotics and perform periodic interactions and monitoring of the pathogen resistance pattern to select appropriate experimental and specific treatment.