TRANSFERABILITY AND POLYMORPHISM OF BARLEY MICROSATELLITE MARKERS ACROSS H-GENOME CONTAINING SPECIES IN THE GENUS HORDEUM (H. VULGARE AND H. BULBOSUM)

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KHODAYARI H.; SAEIDI H.; RAHIMINEJAD M.R.; KOMATSUDA T.

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Journal: THE IRANIAN JOURNAL OF BOTANY Year:2011 | Volume:17 | Issue:2 (34) Page(s): 200-211

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Title

TRANSFERABILITY AND POLYMORPHISM OF BARLEY MICROSATELLITE MARKERS ACROSS H-GENOME CONTAINING SPECIES IN THE GENUS HORDEUM (H. VULGARE AND H. BULBOSUM)

Author(s)

KHODAYARI H. | SAEIDI H. | RAHIMINEJAD M.R. | KOMATSUDA T. | Issue Writer Certificate

Keywords

MICROSATELLITESQ3

GENETIC DIVERSITYQ3

BREEDINGQ3

TRANSFERABILITYQ3

H GENOMEQ3

BARLEYQ3

GERMPLASMQ3

Abstract

Limited numbers of microsatellite markers are available for genetic characterization ofHordeum bulbosum which comprises the secondary genepool of cultivated barely. The objective of this study was to evaluate the TRANSFERABILITY of microsatellite markers fromH. vulgare to H. bulbosum and a preliminary evaluation of their polymorphism. From ninety-three pairs BARLEY SSR primer tested for TRANSFERABILITY, all of them amplified DNA segments inH. vulgare (11 accessions) and 48 pairs (51.61%) were transferable to theH. bulbosum (5 accessions) with high level of polymorphism. Twenty-two (23.65%) SSR markers showed TRANSFERABILITY toH. murinum used as outgroup. A total of 546 alleles were detected by 48 transferred primer pairs in all accessions. The number of alleles per locus ranged from 3 to 13 with an average of 11.375 alleles per locus. The PIC values were ranged from 0.161 to 0.621 with an average of 0.477. The value of PIC inH. vulgare (average PIC=0.639) was significantly higher than H. bulbosum (average PIC=0.316). In dendrogram generated based on SSR data accessions were divided into groups related to their taxonomic classifications, indicating the efficiency of BARLEY SSRs for phylogenetic analyses in H GENOME containing species in the genusHordeum. Based on the results of this study, it can be suggested that the cross species transferable BARLEY SSRs are valuable molecular tools, for GENETIC DIVERSITY analyses in theH. bulbosum for which limited number of microsatellite markers are available. This study provided a set of efficient SSR markers from publicly available BARLEY microsatellite markers for the genetic characterization ofH. bulbosum.

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APA: Copy

KHODAYARI, H., SAEIDI, H., RAHIMINEJAD, M.R., & KOMATSUDA, T.. (2011). TRANSFERABILITY AND POLYMORPHISM OF BARLEY MICROSATELLITE MARKERS ACROSS H-GENOME CONTAINING SPECIES IN THE GENUS HORDEUM (H. VULGARE AND H. BULBOSUM). THE IRANIAN JOURNAL OF BOTANY, 17(2 (34)), 200-211. SID. https://sid.ir/paper/111813/en

Vancouver: Copy

KHODAYARI H., SAEIDI H., RAHIMINEJAD M.R., KOMATSUDA T.. TRANSFERABILITY AND POLYMORPHISM OF BARLEY MICROSATELLITE MARKERS ACROSS H-GENOME CONTAINING SPECIES IN THE GENUS HORDEUM (H. VULGARE AND H. BULBOSUM). THE IRANIAN JOURNAL OF BOTANY[Internet]. 2011;17(2 (34)):200-211. Available from: https://sid.ir/paper/111813/en

IEEE: Copy

H. KHODAYARI, H. SAEIDI, M.R. RAHIMINEJAD, and T. KOMATSUDA, “TRANSFERABILITY AND POLYMORPHISM OF BARLEY MICROSATELLITE MARKERS ACROSS H-GENOME CONTAINING SPECIES IN THE GENUS HORDEUM (H. VULGARE AND H. BULBOSUM),” THE IRANIAN JOURNAL OF BOTANY, vol. 17, no. 2 (34), pp. 200–211, 2011, [Online]. Available: https://sid.ir/paper/111813/en

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