Expression Pattern and Genome-Wide Analysis of HSP Gene Family in Aeluropus littoralis under Salinity Stress

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Hashemi petroudi Seyyed Hamidreza; NEMATZADEH GHORBANALI; MOHAMMADI SAMIRA; Kuhlmann Markus

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Journal: JOURNAL OF CROP BREEDING Year:2019 | Volume:11 | Issue:31 Page(s): 134-143

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Title

Expression Pattern and Genome-Wide Analysis of HSP Gene Family in Aeluropus littoralis under Salinity Stress

Author(s)

Hashemi petroudi Seyyed Hamidreza | NEMATZADEH GHORBANALI | MOHAMMADI SAMIRA | Kuhlmann Markus | Issue Writer Certificate

Keywords

Aeluropus littoralisQ1

Expression AnalysisQ1

Heat Shock ProteinQ1

HSPQ1

Phylogenetic AnalysisQ1

Abstract

HSP protein is an ATP-dependent molecular chaperone that is evolutionarily conserved in bacteria to higher eukaryotes. In plants, HSP s are required for control of normal plant growth and development, as well as immune responses to environmental stimuli. Although there are several studies explaining the physiological role of HSP s in plants, our understanding of their stress response molecular mechanisms, their roles as molecular chaperones, and their molecular interactions with other clients and co-chaperones is still unclear. Therefore the present study aimed to performed a comprehensive analysis of the HSP gene family in halophyte plant Aeluropus littoralis. Subcellular localization analysis showed that four identified AlHSP gene were localized in different subcellular compartments. Based on different bioinformatics tools, HSP homologus genes were identifed from Arabidopsis, rice, maize, soybeen and Brachypodium distachyon species. genes of HSP were phylogenetically clustered into three major groups. Gene structure and motif composition revealed that these genes were relatively conservative in each group, suggesting that members of the same group may also have conserved functions. Based on RNA-seq data, AlHSP gene localized in cytoplasm with expression levels of. was expressed more in root tissue under salinity stress and recovery. The least expression level was observed in AlHSP gene localized in ER in root tissue under salinity stress and recovery. The findings of this study reveal the functional characteristics of the AlHSP genes and provide basic information for future research on the their biological functions.

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APA: Copy

Hashemi petroudi, Seyyed Hamidreza, NEMATZADEH, GHORBANALI, MOHAMMADI, SAMIRA, & Kuhlmann, Markus. (2019). Expression Pattern and Genome-Wide Analysis of HSP Gene Family in Aeluropus littoralis under Salinity Stress. JOURNAL OF CROP BREEDING, 11(31 ), 134-143. SID. https://sid.ir/paper/181093/en

Vancouver: Copy

Hashemi petroudi Seyyed Hamidreza, NEMATZADEH GHORBANALI, MOHAMMADI SAMIRA, Kuhlmann Markus. Expression Pattern and Genome-Wide Analysis of HSP Gene Family in Aeluropus littoralis under Salinity Stress. JOURNAL OF CROP BREEDING[Internet]. 2019;11(31 ):134-143. Available from: https://sid.ir/paper/181093/en

IEEE: Copy

Seyyed Hamidreza Hashemi petroudi, GHORBANALI NEMATZADEH, SAMIRA MOHAMMADI, and Markus Kuhlmann, “Expression Pattern and Genome-Wide Analysis of HSP Gene Family in Aeluropus littoralis under Salinity Stress,” JOURNAL OF CROP BREEDING, vol. 11, no. 31 , pp. 134–143, 2019, [Online]. Available: https://sid.ir/paper/181093/en

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