WHOLE-GENOME SCAN OF EIGHT IRANIAN NATIVE CATTLE BREEDS TO DETECT SELECTION SIGNATURES.

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FOROUGH AMERI NADER; ASADI FOZI MASOUD; ESMAILIZADEH KOSHKOIYEH ALI

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Journal: Journal of Animal Production Year:2016 | Volume:18 | Issue:2 Page(s): 201-213

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Title

WHOLE-GENOME SCAN OF EIGHT IRANIAN NATIVE CATTLE BREEDS TO DETECT SELECTION SIGNATURES.

Author(s)

FOROUGH AMERI NADER | ASADI FOZI MASOUD | ESMAILIZADEH KOSHKOIYEH ALI | Issue Writer Certificate

Keywords

FIXATION INDEXQ2

GENOMIC SCANQ2

IRANIAN NATIVE CATTLEQ1

POPULATION DIFFERENTIATIONQ2

SELECTIVE SWEEPSQ2

Abstract

This study aimed to identify genes that show signatures of selection for mutations in IRANIAN NATIVE CATTLE breeds. The data consisted of genotypes for ~777962 SNP markers of 90 animals from eight IRANIAN NATIVE CATTLE breeds distributing over the country. Therefore, the aim was to identifying divergently selected regions of the genome. Study of POPULATION DIFFERENTIATION across the genome using Weir and Cockerham’ s FST test revealed some regions showing evidence of selection. Across the 30 bovine chromosomes (BTA), seven putative selection signatures were detected. These regions were located on chromosomes 1, 2, 7, 8, 12, 13 and X. Finally, study of the reported QTL regions in the orthologous areas of the cattle genome showed that the genomic regions identified in this study overlapped with the reported QTL representing economically important traits such as milk yield, cold tolerance and reproductive traits. Result of this research provided important information on existence of genetic diversity and selection signatures in IRANIAN NATIVE CATTLE.

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APA: Copy

FOROUGH AMERI, NADER, ASADI FOZI, MASOUD, & ESMAILIZADEH KOSHKOIYEH, ALI. (2016). WHOLE-GENOME SCAN OF EIGHT IRANIAN NATIVE CATTLE BREEDS TO DETECT SELECTION SIGNATURES.. JOURNAL OF ANIMAL PRODUCTION (JOURNAL OF AGRICULTURE), 18(2 ), 201-213. SID. https://sid.ir/paper/209113/en

Vancouver: Copy

FOROUGH AMERI NADER, ASADI FOZI MASOUD, ESMAILIZADEH KOSHKOIYEH ALI. WHOLE-GENOME SCAN OF EIGHT IRANIAN NATIVE CATTLE BREEDS TO DETECT SELECTION SIGNATURES.. JOURNAL OF ANIMAL PRODUCTION (JOURNAL OF AGRICULTURE)[Internet]. 2016;18(2 ):201-213. Available from: https://sid.ir/paper/209113/en

IEEE: Copy

NADER FOROUGH AMERI, MASOUD ASADI FOZI, and ALI ESMAILIZADEH KOSHKOIYEH, “WHOLE-GENOME SCAN OF EIGHT IRANIAN NATIVE CATTLE BREEDS TO DETECT SELECTION SIGNATURES.,” JOURNAL OF ANIMAL PRODUCTION (JOURNAL OF AGRICULTURE), vol. 18, no. 2 , pp. 201–213, 2016, [Online]. Available: https://sid.ir/paper/209113/en

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