PARENTAGE ANALYSIS OF SEEDLESS GRAPEVINE GENOTYPES WITH LIKELIHOOD BASED ASSIGNMENT APPROACHES

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HADADYNEJAD M.; EBADI A.; NAGHAVI M.R.

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Journal: IRANIAN JOURNAL OF HORTICULTURAL SCIENCE AND TECHNOLOGY Year:2009 | Volume:10 | Issue:2 Page(s): 107-126

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Title

PARENTAGE ANALYSIS OF SEEDLESS GRAPEVINE GENOTYPES WITH LIKELIHOOD BASED ASSIGNMENT APPROACHES

Author(s)

HADADYNEJAD M. | EBADI A. | NAGHAVI M.R. | Issue Writer Certificate

Keywords

GRAPEVINEQ3

LIKELIHOODQ2

MICROSATELLITE MARKERQ3

PARENTAGE ASSIGNMENTQ2

Abstract

The breeding program of Iranian table grapes has been started since 1996. In this research, four seedless GRAPEVINEs as male parents, seven seeded GRAPEVINEs as female parents and 12 superior progenies from their cross were used to study with microsatellite molecular marker due to certification of trueness of control cross and their results. The results of Dice similarity coefficient couldn't determine definite parent for some of progenies. To solve this problem, natural logarithm of LIKELIHOOD ratios were used to calculate difference between most likely parent and next probable parent. Confidence and significant levels of those differences were evaluated by simulation at 95%. The highest similarity between a seed parent and its progenies was about 0.65 and belonged to 'Alibaba' cultivar and three S54, S55, S40 progenies. Male and female parents for each progenies were determined by maternity, paternity and parent pair analysis. Fractional assignment method was used when parents of offspring had shared genetic background. For the rest of the superior progenies, father and mother were determined and relationships between them were cleared too. In this study, microsatellite as a codominant marker could discriminate parents and progenies with use of assignment approaches. However, it couldn't be used to discriminate between 'Sultana' and 'Red- Sultana' as male parents and their offspring due to its high similarity. Results showed superior progenies had been hybrid. The relationship well distinguished among progenies as full and half sib. LIKELIHOOD based assignment reduced errors and determined parent of progenies.

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APA: Copy

HADADYNEJAD, M., EBADI, A., & NAGHAVI, M.R.. (2009). PARENTAGE ANALYSIS OF SEEDLESS GRAPEVINE GENOTYPES WITH LIKELIHOOD BASED ASSIGNMENT APPROACHES. IRANIAN JOURNAL OF HORTICULTURAL SCIENCE AND TECHNOLOGY, 10(2), 107-126. SID. https://sid.ir/paper/80877/en

Vancouver: Copy

HADADYNEJAD M., EBADI A., NAGHAVI M.R.. PARENTAGE ANALYSIS OF SEEDLESS GRAPEVINE GENOTYPES WITH LIKELIHOOD BASED ASSIGNMENT APPROACHES. IRANIAN JOURNAL OF HORTICULTURAL SCIENCE AND TECHNOLOGY[Internet]. 2009;10(2):107-126. Available from: https://sid.ir/paper/80877/en

IEEE: Copy

M. HADADYNEJAD, A. EBADI, and M.R. NAGHAVI, “PARENTAGE ANALYSIS OF SEEDLESS GRAPEVINE GENOTYPES WITH LIKELIHOOD BASED ASSIGNMENT APPROACHES,” IRANIAN JOURNAL OF HORTICULTURAL SCIENCE AND TECHNOLOGY, vol. 10, no. 2, pp. 107–126, 2009, [Online]. Available: https://sid.ir/paper/80877/en

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