Atopic dermatitis (AD) is a common chronically relapsing skin disease associated with abnormal cytokine production, and activation of T-helper 2 cells. The aim if this study was to determine whether cytokine gene polymorphisms might influence the development of AD. Single nucleotide polymorphisms in the genes for I-L1alpha, IL-1beta, IL-1R, IL-2, IL-4, IL-6, IL-10, IL-12, TGF beta, TNF and IFNgamma were investigated by PCR and sequence specific primers in Macedonian patients with AD (67 children, age of 6 months to 5 years) and 301 normal unrelated individuals. Susceptible cytokine polymorphisms for AD for eleven genotypes (IL-4 -33/T: T IL-4 -1098/G: G, TGFbeta cdn25C: G, IL-4 -1098/T: T, IL- 1alpha-889/C: T, IL-2+166/T: T, IL-1beta -511/C: T, IL-12 -1188/C: T, IL-10 -1082/A: G, IL- 1beta +3962/C: T, IFNgamma+874/A: T), five diplotypes, six haplotypes, and for alleles were found.Protective cytokine polymorphisms for AD for seven cytokine genotypes (IL-4- 1098/G: T, TGFbeta cdn25/G: G, IL-4 -33/C: C, IL-1alpha -889/C: C, IFNgamma+874/A: A, IL-10-1082/A: A, IL-1beta -511/C: C), one cytokine diplotypes, two cytokine haplotypes, and four cytokine alleles were also found. We concluded that several cytokine polymorphisms are protective, or susceptible associated with AD in population of Macedonians.