Background: Blastocystis sp. is among the most prevalent intestinal protozoan parasites in humans and animals, linked to a range of gastrointestinal and extraintestinal symptoms. Traditional treatments, such as metronidazole, face limitations, including drug resistance and diminished effectiveness, underscoring the need for new therapeutic strategies. Recently, nanoparticles (NPs) have gained interest as alternative treatments due to their distinctive properties, such as small size, large surface area, and inherent antimicrobial activity. Objectives: This study investigated the effects of copper oxide (CuO), iron oxide (Fe3 O4 ), and magnesium oxide (MgO) NPs on the growth and proliferation of Blastocystis sp. in vitro. Materials and Methods: In this laboratory study, Blastocystis sp. cultures were treated with CuO, Fe3 O4, and MgO NPs at varying concentrations (400 µM, 200 µM, 100 µM, 50 µM, 25 µM, 12. 5 µM, and 6. 25 µM) to evaluate their impact on parasite proliferation and viability at 24 hours and 48 hours. Blastocystis sp. samples were identified through microscopic examination and staining tests, followed by calculating parasite inhibition rates and half-maximal inhibitory concentration (IC50) values. The 3-[4, 5-dimethylthiazol-2-yl]-2, 5 diphenyl tetrazolium bromide assay was also performed to assess the cytotoxicity of these NPs on HT-29 cells, followed by the analysis of the selectivity index (SI). Results: Based on the results, NPs significantly suppressed Blastocystis sp. growth and proliferation at all tested concentrations, with inhibition rates increasing alongside NP concentration. Among the NPs, Fe3 O4 displayed the highest inhibitory impact on parasite growth. Additionally, a 48-hour exposure period resulted in a more pronounced decrease in parasite counts compared to the 24-hour exposure. The IC50 values for parasite lethality were determined to be 3. 71 µM and 0. 06 µM for CuO, 2. 87 µM and 5. 68 µM for MgO, and 8. 56 µM and 11. 44 µM for Fe3 O4 at 24 hours and 48 hours, respectively. Half-maximal cytotoxic concentration values for CuO, MgO, and Fe3 O4 were 16. 90 µM, 41. 49 µM, and 8. 01 µM, respectively. Based on the SI values (4. 55, 14. 45, and 0. 93 for CuO, MgO, and Fe3 O4, respectively), MgO emerged as the most favorable candidate due to its high selectivity and safety profile. Conclusion: The findings indicated that MgO NPs, based on their SI, present a promising alternative for inhibiting Blastocystis sp. This research underscores the potential of NPs as innovative therapeutic strategies for treating parasitic infections. However, to support these findings, further in vivo studies are necessary.