FINDING EXACT AND SOLO LTR-RETROTRANSPOSONS IN BIOLOGICAL SEQUENCES USING SVM

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TORABI DASHTI HESAM; MASOUDI NEJAD ALI; ZARE FATEMEH

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Journal Paper

Paper Information

Journal: Iranian Journal of Chemistry and Chemical Engineering Year:2012 | Volume:31 | Issue:2 (62) Page(s): 111-116

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Title

FINDING EXACT AND SOLO LTR-RETROTRANSPOSONS IN BIOLOGICAL SEQUENCES USING SVM

Author(s)

TORABI DASHTI HESAM | MASOUDI NEJAD ALI | ZARE FATEMEH | Issue Writer Certificate

Keywords

LTR

SUPPORT VECTOR MACHINE

DNA REPEACT

REPETITIVE SEQUENCE

Abstract

Finding repetitive subsequences in genome is a challengeable problem in bioinformatics research area. A lot of approaches have been proposed to solve the problem, which could be divided to library base and de novo methods. The library base methods use predetermined repetitive genome’s subsequences, where library-less methods attempt to discover repetitive subsequences by analytical approaches. In this article we propose novel de novo methodology which stands on theory of pattern recognition’s science. Our methodology by using SUPPORT VECTOR MACHINE (SVM) classification and clustering methods could extract exact and Solo LTR-retrotransposons. This methodology issued to show complexity efficiency and applicability of the pattern recognition theories in bioinformatics and biomathematics research areas. We demonstrate applicability of our methodology by comparing its results with other well-known de novo method. Both applications return classes of discovered repetitive subsequences, were their results when had applied on show more that 90 percents similarities.

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APA: Copy

TORABI DASHTI, HESAM, MASOUDI NEJAD, ALI, & ZARE, FATEMEH. (2012). FINDING EXACT AND SOLO LTR-RETROTRANSPOSONS IN BIOLOGICAL SEQUENCES USING SVM. IRANIAN JOURNAL OF CHEMISTRY AND CHEMICAL ENGINEERING (IJCCE), 31(2 (62)), 111-116. SID. https://sid.ir/paper/572407/en

Vancouver: Copy

TORABI DASHTI HESAM, MASOUDI NEJAD ALI, ZARE FATEMEH. FINDING EXACT AND SOLO LTR-RETROTRANSPOSONS IN BIOLOGICAL SEQUENCES USING SVM. IRANIAN JOURNAL OF CHEMISTRY AND CHEMICAL ENGINEERING (IJCCE)[Internet]. 2012;31(2 (62)):111-116. Available from: https://sid.ir/paper/572407/en

IEEE: Copy

HESAM TORABI DASHTI, ALI MASOUDI NEJAD, and FATEMEH ZARE, “FINDING EXACT AND SOLO LTR-RETROTRANSPOSONS IN BIOLOGICAL SEQUENCES USING SVM,” IRANIAN JOURNAL OF CHEMISTRY AND CHEMICAL ENGINEERING (IJCCE), vol. 31, no. 2 (62), pp. 111–116, 2012, [Online]. Available: https://sid.ir/paper/572407/en

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