Background: Acinetobacter baumannii is a significant nosocomial pathogen around the world, especially in the intensive care unitthat most A. baumannii infections are caused by the outbreak strains.Objectives: This study has been performed in Acinetobacter baumannii isolates, aimed to detect integron classes I, II, III and moleculartyping of A. baumannii genes.Methods: In this Cross-sectional study, Acinetobacter baumannii isolated from 150 patients in Isfahan hospitals then antibiotic resistancepattern was determined by disk diffusion method (Kirby Bauer). The presence of genes coding in antibiotic resistance andintegrons class I, II, III were analyzed by using of M-PCR method. The data were analyzed by Chi-square, Fischer’s test and SPSS statisticalsoftware version 16.Results: Antibiotic resistance pattern for Acinetobacter baumanniishowthat the high resistancewasfor ciprofloxacin with frequencyof 98.3%, ceftazidime with 89.4%, and tetracycline with frequency of 87.3%. The most sensitive antibiotics were chloramphenicol, andnitrofurantoin with frequency of 3.5% and 3.2% resistance. The detection of dfrA1 (63.7%), sul1 (68.6%), aac (3) -IV (54.4%), tet (B) (22.4%), tet (A) (78.3%), aadA1 (15.4%), CITM (17. %), vim (12.2%), Qnr (17.1%), blaSHV (19.8%), sim (7.8%), Oxa-24-like (13.2%), Oxa-51-like (11.9%), Oxa-58-like (39.4%), Oxa-23-like (12.6%), imp (9.2%), cmlA (19%) and cat1 (8.6%) were respectively reported too. Also in this study Frequency ofintegrons class 1, 2, 3 were (100%), (28%), (6.6%) respectively.Conclusions: High prevalence of integrons among Acinetobater baumannii isolated from Isfahan hospitals indicate the importancerole of integron classes in multidrug resistance. Considering the increasing pattern of MDRinfections is one of the important issuesof treatment which can be effective strategy for curing.