In this study, magnetite/ aminopropyltriethoxysilane/ glutaraldehyde (Fe3O4/ APTES/GA) nanoadsorbents were synthesized, and their applications for the adsorption of thorium ions from aqueous solutions were studied in a batch sorption process. The magnetite nanoparticles were synthesized with an average diameter of 20 nm by co-precipitation method. Then surface modification of Fe3O4 nanoparticles was carried out with 3-aminopropyltriethoxysilane and glutaraldehyde. The influence of the several variables, such as pH (1-5), Th (IV) initial concentration (50- 300 mg/L), and adsorbent dose (1- 5 g/L) on the Th (IV) adsorption was investigated by response surface methodology (RSM) based on Box-Behnken design. The results of analysis of variance (ANOVA) showed adsorbent dosage, initial concentration of thorium, and pH were the most effective factors on adsorption of thorium. The results showed that the highest absorption capacity (q) was 107.23 mg/g at pH=4.5, initial concentration of 250 mg/L, and adsorbent dosage of 1 g/L for 90 minutes. Also thermodynamic parameters (DGo, DHo, DSo) declared that the Th (IV) adsorption was endothermic and spontaneous in temperature range of 25 to 45°C.