Modelface: an Application Programming Interface (API) for Homology Modeling Studies Using Modeller Software

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SAKHTEMAN AMIRHOSSEIN; ZARE BIJAN

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Journal Paper

Paper Information

Journal: Iranian Journal of Pharmaceutical Research Year:2016 | Volume:15 | Issue:4 Page(s): 801-807

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Title

Modelface: an Application Programming Interface (API) for Homology Modeling Studies Using Modeller Software

Author(s)

SAKHTEMAN AMIRHOSSEIN | ZARE BIJAN | Issue Writer Certificate

Keywords

Application Programming interface;

Homology modeling;

Batch scripting;

Single point mutation;

Missing atom types

Abstract

An interactive application, Modelface, was presented for Modeller software based on windows platform. The application is able to run all steps of homology modeling including pdb to fasta generation, running clustal, model building and loop refinement. Other modules of modeler including energy calculation, energy minimization and the ability to make single point mutations in the PDB structures are also implemented inside Modelface. The API is a simple batch based application with no memory occupation and is free of charge for academic use. The application is also able to repair Missing atom types in the PDB structures making it suitable for many molecular modeling studies such as docking and molecular dynamic simulation. Some successful instances of modeling studies using Modelface are also reported.

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APA: Copy

SAKHTEMAN, AMIRHOSSEIN, & ZARE, BIJAN. (2016). Modelface: an Application Programming Interface (API) for Homology Modeling Studies Using Modeller Software. IRANIAN JOURNAL OF PHARMACEUTICAL RESEARCH (IJPR), 15(4), 801-807. SID. https://sid.ir/paper/289079/en

Vancouver: Copy

SAKHTEMAN AMIRHOSSEIN, ZARE BIJAN. Modelface: an Application Programming Interface (API) for Homology Modeling Studies Using Modeller Software. IRANIAN JOURNAL OF PHARMACEUTICAL RESEARCH (IJPR)[Internet]. 2016;15(4):801-807. Available from: https://sid.ir/paper/289079/en

IEEE: Copy

AMIRHOSSEIN SAKHTEMAN, and BIJAN ZARE, “Modelface: an Application Programming Interface (API) for Homology Modeling Studies Using Modeller Software,” IRANIAN JOURNAL OF PHARMACEUTICAL RESEARCH (IJPR), vol. 15, no. 4, pp. 801–807, 2016, [Online]. Available: https://sid.ir/paper/289079/en

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