COMPLETE GENOME SEQUENCE OF OCEANIMONAS SP. GK1: A HALOTOLERANT BACTERIUM FROM GAVKHOUNI WETLAND IN IRAN

Q: How can I download an article?

To download an article from SID, first log in to the site, search for the article title, and click on the 'Download Article' option.

Q: How can I download an ISI article?

To download an ISI article on SID, enter the keyword or article title in the search bar, view the relevant results, click on the desired article, and select the 'Download Article' option.

Q: How can I access the SID database?

To access the SID database, visit SID.ir, create an account, and log in to access scientific resources.

Q: Is downloading articles from SID free?

Some articles on SID are available for free, while others require payment. Details are specified on the article's page.

PARSA YEGANEH LALEH; AZARBAIJANI REZA; SARIKHAN SAJJAD; MOUSAVI HOSSEIN; RAMEZANI MOHADESEH; AMOOZEGAR MOHAMMAD ALI; SHAHZADEH FAZELI ABOLHASSAN; HOSSEINI SALEKDEH GHASEM

مرکز اطلاعات علمی Scientific Information Database (SID) - Trusted Source for Research and Academic Resources

Seminar Paper

Paper Information

Seminar: CONGRESS OF IRANIAN GENETICS
Year:2014 | Issue:1

Download Full-Text

View:

254

Download:

Information Seminar Paper

Title

COMPLETE GENOME SEQUENCE OF OCEANIMONAS SP. GK1: A HALOTOLERANT BACTERIUM FROM GAVKHOUNI WETLAND IN IRAN

Author(s)

Keywords

OCEANIMONAS SP. GK1

GENOME SEQUENCING

ANNOTATION

PHB

Abstract

HERE WE PRESENT THE WHOLE GENOME SEQUENCE OF OCEANIMONAS SP.GK1 WHICH CONSISTS OF A SINGLE CIRCULAR CHROMOSOME WITH 3514537 BP (CP003171 ACCESSION NO.) AND TWO PLASMIDS WITH 8462 (CP003172 ACCESSION NO.) AND 4245 BP (CP003173 ACCESSION NO.) IN LENGTH.THE GRAM NEGATIVE ROD-SHAPED OCEANIMONAS SP. GK1 (IBRC-M 10197), ISOLATED FROM GAVKHOUNI WETLAND IN IRAN, BELONGS TO THE AEROMONADACEAE FAMILY. IT IS A MOTILE AEROBIC BACTERIUM WHICH CAN TOLERATE UP TO 12% NACL AND GROWS AT 10- 45OC (OPTIMUM 35OC), PH 6-10 (OPTIMUM 8) AND PRODUCES HIGH AMOUNTS OF PHB (POLY-B-HYDROXYBUTYRATE) UNDER UNBALANCED GROWTH CONDITIONS AS CARBON AND ENERGY RESERVOIR. THE WHOLE GENOME SEQUENCE OF THIS STRAIN IS THE FIRST REPORT OF COMPLETELY SEQUENCED AND ANNOTATED GENOME FROM THE OCEANIMONAS GENUS.WHOLE GENOME SEQUENCING OF OCEANIMONAS SP. GK1 WAS PERFORMED ON 454 GS-FLX TITANIUM. IN TOTAL, 93,921,861 BASES OF 247,884 RANDOM READS WITH AVERAGE READ LENGTH OF 378 NUCLEOTIDES WERE OBTAINED. THE APPROXIMATE COVERAGE OF OCEANIMONAS SP. GK1 GENOME WAS 30 FOLD. THE SEQUENCE READS WERE ASSEMBLED INTO 72 CONTIGS USING NEWBLER ASSEMBLER SOFTWARE V. 2.3. PAIRED END SEQUENCING RESULTED IN 3 SCAFFOLDS WITH 47 GAPS. ALL GAPS WERE CLOSED USING SANGER DNA SEQUENCING. THE RAST ANNOTATION PIPELINE WAS USED TO ANNOTATE THE DNA SEQUENCE.THE COMPLETE GENOME CONTAINED 3338 GENES WITH 111 STRUCTURAL RNAS, 2516 NON-HYPOTHETICAL PROTEIN AND 711 HYPOTHETICAL PROTEIN CODING SEQUENCES. THE GC CONTENT OF THE COMPLETE GENOME WAS 61.1%.THE OCEANIMONAS SP. GK1 GENOME HAS THE B-KETOACYL-COA THIOLASE, ACETOACETYL-COA REDUCTASE AND PHB SYNTHASE ENCODED GENES FROM THE THREE–STEP PHB SYNTHESIS PATHWAY. THE INVESTIGATION OF GENOME SEQUENCE SHOWED THE PRESENCE OF ENZYMES INVOLVED IN PHENOL DEGRADATION AND B-KETOADIPATE PATHWAY SUCH AS CATECHOL 1,2- DIOXYGENASE, 3-OXOADIPATE COA-TRANSFERASE (GLUTACONATE COA-TRANSFERASE), MUCONATE CYCLOISOMERASE (EC 5.5.1.1) AND MUCONOLACTONE ISOMERASE (EC 5.3.3.4)

Cites

No record.

References

No record.

Cite

APA: Copy

PARSA YEGANEH, LALEH, AZARBAIJANI, REZA, SARIKHAN, SAJJAD, MOUSAVI, HOSSEIN, RAMEZANI, MOHADESEH, AMOOZEGAR, MOHAMMAD ALI, SHAHZADEH FAZELI, ABOLHASSAN, & HOSSEINI SALEKDEH, GHASEM. (2014). COMPLETE GENOME SEQUENCE OF OCEANIMONAS SP. GK1: A HALOTOLERANT BACTERIUM FROM GAVKHOUNI WETLAND IN IRAN. CONGRESS OF IRANIAN GENETICS. SID. https://sid.ir/paper/906862/en

Vancouver: Copy

PARSA YEGANEH LALEH, AZARBAIJANI REZA, SARIKHAN SAJJAD, MOUSAVI HOSSEIN, RAMEZANI MOHADESEH, AMOOZEGAR MOHAMMAD ALI, SHAHZADEH FAZELI ABOLHASSAN, HOSSEINI SALEKDEH GHASEM. COMPLETE GENOME SEQUENCE OF OCEANIMONAS SP. GK1: A HALOTOLERANT BACTERIUM FROM GAVKHOUNI WETLAND IN IRAN. 2014. Available from: https://sid.ir/paper/906862/en

IEEE: Copy

LALEH PARSA YEGANEH, REZA AZARBAIJANI, SAJJAD SARIKHAN, HOSSEIN MOUSAVI, MOHADESEH RAMEZANI, MOHAMMAD ALI AMOOZEGAR, ABOLHASSAN SHAHZADEH FAZELI, and GHASEM HOSSEINI SALEKDEH, “COMPLETE GENOME SEQUENCE OF OCEANIMONAS SP. GK1: A HALOTOLERANT BACTERIUM FROM GAVKHOUNI WETLAND IN IRAN,” presented at the CONGRESS OF IRANIAN GENETICS. 2014, [Online]. Available: https://sid.ir/paper/906862/en

Related Journal Papers

No record.

Related Seminar Papers

No record.

Related Plans

No record.

Recommended Workshops