Review of Different Sequence Motif Finding Algorithms

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Hashim Fatma A.; MABROUK MAI S.; Al Atabany Walid

مرکز اطلاعات علمی Scientific Information Database (SID) - Trusted Source for Research and Academic Resources

Journal Paper

Paper Information

Journal: Avicenna Journal of Medical Biotechnology Year:2019 | Volume:11 | Issue:2 Page(s): 130-148

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Information Journal Paper

Title

Review of Different Sequence Motif Finding Algorithms

Author(s)

Hashim Fatma A. | MABROUK MAI S. | Al Atabany Walid | Issue Writer Certificate

Keywords

Algorithms

Bioinformatics

Consensus

Gene expression regulation

Nucleotide motif

Protein binding

Abstract

The DNA motif discovery is a primary step in many systems for studying gene func-tion. Motif discovery plays a vital role in identification of Transcription Factor Binding Sites (TFBSs) that help in learning the mechanisms for regulation of gene expression. Over the past decades, different Algorithms were used to design fast and accurate motif discovery tools. These Algorithms are generally classified into Consensus or prob-abilistic approaches that many of them are time-consuming and easily trapped in a local optimum. Nature-inspired Algorithms and many of combinatorial Algorithms are recently proposed to overcome these problems. This paper presents a general clas-sification of motif discovery Algorithms with new sub-categories that facilitate build-ing a successful motif discovery algorithm. It also presents a summary of comparison between them.

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APA: Copy

Hashim, Fatma A., MABROUK, MAI S., & Al Atabany, Walid. (2019). Review of Different Sequence Motif Finding Algorithms. AVICENNA JOURNAL OF MEDICAL BIOTECHNOLOGY (AJMB), 11(2), 130-148. SID. https://sid.ir/paper/314032/en

Vancouver: Copy

Hashim Fatma A., MABROUK MAI S., Al Atabany Walid. Review of Different Sequence Motif Finding Algorithms. AVICENNA JOURNAL OF MEDICAL BIOTECHNOLOGY (AJMB)[Internet]. 2019;11(2):130-148. Available from: https://sid.ir/paper/314032/en

IEEE: Copy

Fatma A. Hashim, MAI S. MABROUK, and Walid Al Atabany, “Review of Different Sequence Motif Finding Algorithms,” AVICENNA JOURNAL OF MEDICAL BIOTECHNOLOGY (AJMB), vol. 11, no. 2, pp. 130–148, 2019, [Online]. Available: https://sid.ir/paper/314032/en

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