Gallbladder cancer integrated bioinformatics analysis of protein profile data

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ZALI MOHAMMAD REZA; ZAMANIAN AZODI MONA; RAZZAGHI ZAHRA; Heydari Mohammad Hossain

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Journal Paper

Paper Information

Journal: Gastroenterology and Hepatology From Bed to Bench Year:2019 | Volume:12 | Issue:suppl 1 Page(s): 66-73

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Title

Gallbladder cancer integrated bioinformatics analysis of protein profile data

Author(s)

ZALI MOHAMMAD REZA | ZAMANIAN AZODI MONA | RAZZAGHI ZAHRA | Heydari Mohammad Hossain | Issue Writer Certificate

Keywords

Gallbladder cancer

Protein-protein interaction network analysis

Hub-bottleneck proteins

Biological process

Abstract

Aim: Identifying the critical genes that differentiate gall bladder cancer from a normal gall bladder and the related biological terms was the aim of this study. Background: The molecular mechanism underlying gall bladder cancer (GBC) trigger and development still requires investigations. Potential therapeutic biomarkers can be identified through protein-protein interaction network prediction of proteome as a complementary study. Methods: Here, a literature review of proteomics studies of gall bladder cancer from 2010 to 2019 was undertaken to screen differentially expressed proteins in this cancer. A network of 27 differentially expressed proteins (DEPs) via Cytoscape 3. 7. 1 and its plug-ins was constructed and analyzed. Results: Ten proteins were introduced as hub-bottlenecks among which four were from DEPs. The gene ontology analysis also indicated that positive regulation of multi-organism process and regulation of response to biotic stimulus are the most disrupted Biological processes of GBC considering their relationships with the DEPs. Conclusion: ACTG, ALB, GGH, and DYNC1H1, and relative biological terms were introduced as drug targets and possible diagnostic biomarkers.

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APA: Copy

ZALI, MOHAMMAD REZA, ZAMANIAN AZODI, MONA, RAZZAGHI, ZAHRA, & Heydari, Mohammad Hossain. (2019). Gallbladder cancer integrated bioinformatics analysis of protein profile data. GASTROENTEROLOGY AND HEPATOLOGY FROM BED TO BENCH, 12(suppl 1), 66-73. SID. https://sid.ir/paper/324959/en

Vancouver: Copy

ZALI MOHAMMAD REZA, ZAMANIAN AZODI MONA, RAZZAGHI ZAHRA, Heydari Mohammad Hossain. Gallbladder cancer integrated bioinformatics analysis of protein profile data. GASTROENTEROLOGY AND HEPATOLOGY FROM BED TO BENCH[Internet]. 2019;12(suppl 1):66-73. Available from: https://sid.ir/paper/324959/en

IEEE: Copy

MOHAMMAD REZA ZALI, MONA ZAMANIAN AZODI, ZAHRA RAZZAGHI, and Mohammad Hossain Heydari, “Gallbladder cancer integrated bioinformatics analysis of protein profile data,” GASTROENTEROLOGY AND HEPATOLOGY FROM BED TO BENCH, vol. 12, no. suppl 1, pp. 66–73, 2019, [Online]. Available: https://sid.ir/paper/324959/en

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